OCCAM preprints and publications

This is the list of all OCCAM Papers to date in reverse chronological order. For more information or to request a copy please contact occam-admin [-at-] maths [dot] ox [dot] ac [dot] uk.

To go directly to preprints from a previous year please use these links:

Note that the articles below are the submitted manuscripts. For final versions please follow the link to the corresponding journal webpage.

2014 Preprints and publications

[14\28]
Pearson, J.W.; Stoll, M.; Wathen, A.J.: Regularization-robust preconditioners for time-dependent PDE-constrained optimization Problems: SIAM Journal on Matrix Analysis and Applications

[14\27]
Pestana, J.; Wathen, A.J.: A preconditioned MINRES method for nonsymmetric Toeplitz matrices: SIAM Journal on Matrix Analysis and Applications

[14\26]
Titley-Peloquin, D.; Pestana, J.; Wathen, A.J.: GMRES convergence bounds that depend on the right-hand side vector: IMA Journal of Numerical Analysis

[14\25]
Rees, T.; Stoll, M.; Wathen, A.J.: All-at-once preconditioning in PDE constrained optimization: Kybernetika

[14\24]
Bowden, L.; Maini, P.K.; Moulton, D.E.; Wang, X.; Tang, J.B.; Liu, P.; Byrne, H.M.: An ordinary differential equation model for full thickness wounds and the effects of diabetes: Journal of Theoretical Biology

[14\23]
Bell, C.G.; Byrne, H.M.; Whiteley, J.P.; Waters, S.L.: Heat or mass transfer at low Péclet number for Brinkman and Darcy flow round a sphere: International Journal of Heat and Mass Transfer

[14\22]
Wolkenhauer, O.; Auffray, C.; Brass, O.; Clairambault, J.; Deutsch, A.; Drasdo, D.; Gervasio, F.; Preziosi, L.; Maini, P.; Marciniak-Czochra, A.; Kossow, C.; Kuepfer, L.; Rateitschak, K.; Ramis-Conde, I.; Ribba, B.; Schuppert, A.; Smallwood, R.; Stamatakos, G.; Winter, F.; Byrne, H.: Enabling multiscale modeling in systems medicine: Genome Medicine

[14\21]
Holcman, D.; Duc, K.D.; Jones, A.; Byrne, H.M.; Burrage, K.: Post-transcriptional regulation in the nucleus and cytoplasm: study of mean time to threshold (MTT) and narrow escape problem: Journal of Mathematical Biology

[14\20]
Chapman, L.A.C.; Shipley, R.J.; Whiteley, J.P.; Ellis, M.J.; Byrne, H.M.; Waters, S.L.: Optimising cell aggregate expansion in a hollow fibre bioreactor via mathematical modelling: PLOS One

[14\19]
O’Dea, R.D.; Nelson, M.R.; El-Haj, A.J.; Waters, S.L.;  Byrne, H.M.: A multiscale analysis of nutrient transport and biological tissue growth in vitro: Mathematical Medicine and Biology: A Journal of the IMA

[14\18]
Zhu, S.; Wathen, A.: Convexity and solvability for compactly supported radial basis functions with different shapes: Journal of Scientific Computing

[14\17]
Lee, W.; Farmer, C.: Data assimilation by conditioning of driving noise on future observations: IEEE Transactions on Signal Processing

[14\16]
Flegg, M.; Ruediger, S.; Erban, R.: Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release: Journal of Chemical Physics

[14\15]
Flegg, M.; Chapman, J.; Zheng, L.; Erban, R.: Analysis of the two-regime method on square meshes: SIAM Journal on Scientific Computing

[14\14]
Cao, Y.; Erban, R.: Stochastic Turing patterns: analysis of compartment-based approaches:  Bulletin of Mathematical Biology

[14\13]
Flegg, M.; Hellander, S.; Erban, R.: Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations: Journal of Computational Physics

[14\12]
Franz, B.; Xue, C.; Painter, K.; Erban, R.: Travelling waves in hybrid chemotaxis models: Bulletin of Mathematical Biology

[14/11]
Stewart, P.S.; Jensen, O.E.; Foss, A.J.E.: A theoretical model to allow prediction of the CSF pressure from observing the retinal venous pulse: Investigative Ophthalmology and Visual Science

[14/10]
Imbers, J.; Lopez, A.; Huntingford, C.; Allen, M.: Sensitivity of climate change detection and attribution to the characterization of internal climate variability: Journal of Climate

[14/09]
Hantsch, A.; Reis, T.; Gross, U.: Moment method boundary conditions for multiphase lattice Boltzmann simulations with partially-wetted walls: Journal of Computational Multiphase Flow

[14\08]
Farrell, P.; Pestana, J.; Block preconditioners for linear systems arising from multilevel RBF collocation:  Numerical Linear Algebra with Applications

[14/07]
Dallaston, M.C.; Hewitt, I.J.: Free-boundary models of a meltwater conduit: Physics of Fluids

[14/06]
Yavari, A.; Goriely, A.: Non-metricity and the nonlinear mechanics of distributed point defects

[14/05]
Eperon, G.E.; Burlakov, V.M.; Goriely, A.; Snaith, H.J.: Neutral color semitransparent microstructured perovskite solar cells: ACS Nano

[14/04]
Vella, D.; du Pontavice, E.; Hall, C.L.; Goriely, A.: The magneto-elastica: from self-buckling to self-assembly: Proceedings of the Royal Society A

[14/03]
Hennessy, M.G.; Burlakov, V.M.; Münch, A.; Wagner, B.; Goriely, A.: Propagating topological transformations in thin immiscible bilayer films: Europhysics Letters

[14/02]
Lang, G.; Stewart, S.; Waters, S.; Vella, D.; Goriely, A.: Is the Donnan effect sufficient to explain swelling in brain tissues?: Journal of the Royal Society Interface

[14/01]
Prior, C: Helical birods: An elastic model of helically wound double-stranded rods: Journal of Elasticity

2013 Preprints and publications

[13/65]
Trinh, P.H.; Wilson, S.K.; Stone, H.A.: A pinned or free-floating rigid plate on a thin viscous film: Journal of Fluid Mechanics

[13/64]
Bruna, M.; Breward, C.J.W.: The influence of nonpolar lipids on tear film dynamics: Journal of Fluid Mechanics

[13/63]
Roper, M.; Simonin, A.; Hickey P.C.; Leeder, A.; Glass, N.L.: Nuclear dynamics in a fungal chimera: PNAS

[13/62]
Davit, Y.; Bell, C.G.; Byrne, H.M.; Chapman, L.A.C.; Kimpton, L.S.; Lang, G.E.; Leonard, K.H.L.; Oliver, J.M.; Pearson, N.C.; Shipley, R.J.; Waters, S.L.; Whiteley, J.P.; Wood, B.D.; Quintard, M.: Homogenization via formal multiscale asymptotics and volume averaging: How do the two techniques compare?: Advances in Water Resources

[13/61]
Kralj, S.; Majumdar, A.: Order reconstruction patterns in nematic liquid crystal wells: Proceedings of the Royal Society A

[13/60]
Majumdar, A.; Raisch, A.: Twisted rods, helices and buckling solutions in three dimensions

[13/59]
Chen, Y.; Macdonald, C.B.: The closest point method and multigrid solvers for elliptic equations on surfaces: SIAM Journal on Scientific Computing

[13/58]
Smith, N.A.S.; Burlakov, V.M.; Ramos A.M.: Mathematical modeling of the growth and coarsening of ice particles in the context of high pressure shift freezing processes: Journal of Physical Chemistry B

[13/57]
Eperon, G.E.; Burlakov, V.M.; Docampo, P.; Goriely, A.; Snaith, H.J.: Morphological control for high performance, solution-processed planar heterojunction perovskite solar cells: Advanced Functional Materials

[13/56]
Burlakov, V.M.; Eperon, G.E.; Snaith, H.J.; Chapman, S.J.; Goriely A.: Controlling coverage of solution cast materials with unfavourable surface interactions :  Applied Physics Letters

[13/55]
von Glehn, I.; März, T; Macdonald, C.B.: An embedded method-of-lines approach to solving PDEs on surfaces

[13/54]
Sánchez, C.; Bueno-Orovio, A.; Rodriguez, B.: Cell repolarization variability modulates atrial fibrillation dynamics in 3D virtual human atria: Computing in Cardiology 2013

[13/53]
Kimpton, L.S.; Whiteley, J.P.; Waters, S.L.; Oliver, J.M.: The effect of membrane regulated actin polymerization on a two-phase flow model for cell motility: IMA Journal of Applied Mathematics

[13/52]
Pestana, J.; Wathen, A.J.: The antitriangular factorisation for saddle point matrices: SIAM Journal on Matrix Analysis and Applications

[13/51]
Pestana, J.; Wathen, A.J.: Natural preconditioners for saddle point problems

[13/50]
Spill, F.; Guerrero, P.; Alarcon, T.; Maini, P.K.; Byrne, H.M.: Mesoscopic and continuum modelling of angiogenesis: Journal of Mathematical Biology

[13/49]
Pan, J.; Ballouli, A.O.; Rollny, L., Voznyy, O.; Burlakov, V.; Goriely, A.; Sargent, E.H.; Bakr, O.M.: Automated synthesis of photovoltaic-quality colloidal quantum dots using separate nucleation and growth stages: ACS Nano

[13/48]
Raisch, A.; Majumdar, A.: Order reconstruction phenomena and temperature-driven dynamics in a 3D zenithally bistable device: Europhysics Letters

[13/47]
Yokota, R.; Pestana, J.; Ibeid, H.; Keyes, D.: Fast multipole preconditioners for sparse matrices arising from elliptic equations:

[13/46]
Hale, N.; Townsend, A.: Fast, simple, and stable Chebyshev–Legendre transform using an asymptotic formula: SIAM Journal on Scientific Computing

[13/45]
Dunster, J.L.; Byrne, H.M.; King, J.R.: The resolution of inflammation a mathematical model of neutrophil and macrophage interactions: Bulletin of Mathematical Biology

[13/44]
Paterson, C.; Wilson, S.K.; Duffy, B.R.: Strongly coupled interaction between a ridge of fluid and an inviscid external airflow:

[13/43]
Minchole, A.; Bueno-Orovio, A.; Laguna, P.; Pueyo, E.; Rodriguez, B.: Basis for the induction of phase-2 reentry in the Brugada syndrome in humans: Insights from computer simulations:  (OCCAM Technical Report)

[13/42]
Bueno, A.; Cherry, E.M.; Evans, S.J.; Fenton, F.H.: Basis for the induction of phase-2 reentry in the Brugada syndrome in humans: Insights from computer simulations:  (OCCAM Technical Report)

[13/41]
Lai, Y.M.; Porter, M.A.: Noise-induced synchronization, desynchronization, and clustering in globally coupled nonidentical oscillators: Physical Review E

[13/40]
Hennessy, M.G.; Münch, A.: Dynamics of a slowly evaporating solvent-polymer mixture with a deformable upper surface: IMA Journal of Applied Mathematics

[13/39]
Qi, Q.; Wattis, J.A.D.; Byrne, H.M.: Stochastic simulation of normal ageing and Werner's syndrome: Bulletin of Mathematical Biology

[13/38]
Burlakov, V.; Foulds, I.; Goriely, A.: LIMIS: Light Induced Modulation Instability of a Surface, a new mechanism for surface instability under intense illumination:

[13/37]
Yavari, A.; Goriely, A.: Nonlinear elastic inclusions in isotropic solids: Proceedings of the Royal Society A

[13/36]
Paterson, C.; Wilson, S.K.; Duffy, B.R..; Duffy B.R.: Rivulet flow round a horizontal cylinder subject to a uniform surface shear stress: Quarterly Journal of Mechanics and Applied Mathematics

[13/35]
Bueno-Orovio, A.; Kay, D.; Grau, V.; Rodriguez, B.; Burrage, K.: Fractional diffusion models of cardiac electrical propagation: role of structural heterogeneity in dispersion of repolarization: Journal of the Royal Society Interface

[13/34]
Allen, R.; Reis, T.: A lattice Boltzmann model for natural convection in cavities:

[13/33]
Tsai, S.S.H.; Griffiths, I.M.; Li, Z.; Kim, P.; Stone, H.A.: Interfacial deflection and jetting of a paramagnetic particle-laden fluid: theory and experiment: Soft Matter

[13/32]
Neukirch, S.; Goriely, A.; Olivier, T.: Singular inextensible limit in the vibrations of post-buckled rods: analytical derivation and role of boundary conditions: Journal of Sound and Vibration

[13/31]
Pestana, J.: On the eigenvalues and eigenvectors of nonsymmetric saddle point matrices preconditioned by block triangular matrices: SIAM Journal on Matrix Analysis and Applications

[13/30]
Zhou, X.; Bueno-Orovio A.; Orini, M.; Hanson, B.; Haywood, M.; Taggart, P.; Lambiase, P.; Burrage, K.; Rodriguez, B.: Population of human ventricular cell models calibrated with in vivo measurements unravels ionic mechanisms of cardiac alternans: Computing in Cardiology Conference

[13/29]
Wallman, M.; Bueno-Orovio, A.; Rodriguez, B.: Computational probabilistic quantification of pro-arrhythmic risk from scar and left-to-right heterogeneity in the human ventricles: Computing in Cardiology Conference

[13/28]
Zhu, S.-X.; Gu, T.-X., Liu, X.-P.: Minimizing synchronizations in sparse iterative solvers for distributed supercomputers: Computer & Mathematics with Applications

[13/27]
März, T.: A well-posedness framework for inpainting based on coherence transport:

[13/26]
Gadêlha, H.; Gaffney, E.A.; Goriely, A.: The counterbend phenomenon in flagellar axonemes and cross-linked filament bundles: Proceedings of the National Academy of Sciences of the United States of America

[13/25]
O'Keeffe S. G., Moulton D. E., Waters S. L., Goriely A.: Growth-induced axial buckling of a slender elastic filament embedded in an isotropic elastic matrix: International Journal of Nonlinear Mechanics

[13/24]
Woolley, T.E.; Gaffney, E.A.; Oliver, J.M.; Baker, R.E.; Waters, S.L.; Goriely, A.: Cellular blebs: pressure-driven, axisymmetric, membrane protrusions: Biomechanics and Modeling in Mechanobiology

[13/23]
Bueno-Orovio, A.; Sánchez, C.; Pueyo, E.; Rodriguez, B.: Na/K pump regulation of cardiac repolarization: Insights from a systems biology approach: European Journal of Physiology

[13/22]
Farrell, P.; Wendland, H.: RBF multiscale collocation for second order elliptic boundary value problems: SIAM Journal on Numerical Analysis

[13/21]
Duffy, B.; Thiyagalingam, J.; Walton, S.; Smith, D.J.; Trefethen, A.; Kirkman-Brown, J.C.; Gaffney, E.A.; Chen, M.: Glyph-based video visualization for semen analysis: Transactions on Visualization and Computer Graphics

[13/20]
Thiyagalingam, J.; Walton, S.; Duffy, B.; Trefethen, A.; Chen, M.: Complexity plots: Computer Graphics Forum

[13/19]
Kimpton, L.S.; Whiteley, J.P.; Waters, S.L.; Oliver, J.M.: On a poroviscoelastic model for cell crawling: Journal of Mathematical Biology

[13/18]
Herterich, J.G.; Griffiths, I.M.; Field, R.W.; Vella, D.: The effect of a concentration-dependent viscosity on particle transport in a channel flow with porous walls: AIChE Journal

[13/17]
Knoche, S.; Vella, D.; Aumaitre, E.; Degen, P.; Rehage, H.; Cicuta, P.; Kierfeld, J.: Elastometry of deflated capsules: elastic moduli from shape and wrinkle analysis: Langmuir

[13/16]
Britton, O.J.; Bueno-Orovio, A.; Van Ammel, K.; Lu, H.R.; Towart, R.; Gallacher, D.J.; Rodriguez, B.: Experimentally-calibrated population of models predicts and explains inter-subject variability in cardiac cellular electrophysiology: PNAS

[13/15]
Cotter, S.L.; Klika, V.; Kimpton, L.S.; Collins, S.L.; Heazell, A.E.P.: A stochastic model for early placental development: Journal of the Royal Society Interface

[13/14]
Yatim, Y.M.; Duffy, B.R.; Wilson, S.K.: Travelling-wave similarity solutions for a steadily translating slender dry patch in a thin fluid film: Physics of Fluids

[13/13]
Paterson, C.; Wilson, S.K.; Duffy, B.R.: Pinning, de-pinning and re-pinning of a slowly varying rivulet: European Journal of Mechanics B/Fluids

[13/12]
Wagner, T.J.W.; Vella, D.: Switch on, switch off: stiction in nanoelectromechanical switches: Nanotechnology

[13/11]
Đuričković, B.; Goriely, A.; Maddocks, J.H.: Twist and stretch of helices: all you need is Love

[13/10]
Schroll, R.D.; Adda-Bedia, M.; Cerda, E.; Huang, J.; Menon, N.; Russell, T.P.; Toga, K.B.; Vella, D.; Davidovitch, B.: Capillary deformations of bendable films: Physical Review Letters

[13/09]
Sotiris, A.; Prokopiou, S.A.; Byrne, H.M.; Jeffrey, M.R.; Robinson, R.S.; Mann, G.E.; Owen, M.R.: Mathematical analysis of a model for the growth of the bovine corpus luteum: Journal of Mathematical Biology

[13/08]
Bruna, M.; Chapman, S.J.: Diffusion of finite-size particles in confined geometries: Bulletin of Mathematical Biology

[13/07]
Knox, D.J.; Wilson, S.K.; Duffy, B.R.; McKee, S.: Porous squeeze-film flow: IMA Journal of Applied Mathematics

[13/06]
Biddle, H.; von Glehn, I.; Macdonald, C.B.; März, T.: A volume-based method for denoising on curved surfaces: IEEE International Conference on Image Processing

[13/05]
Macdonald, C.B.; Merriman, B.; Ruuth, S.J.: Simple computation of reaction-diffusion processes on point clouds: PNAS

[13/04]
Ketcheson, D.I.; Macdonald, C.B.; Ruuth, S.J.: Spatially partitioned embedded Runge-Kutta Methods: SIAM Journal on Numerical Analysis

[13/03]
Holland, M.A.; Kosmata,T.; Goriely, A.; Kuhl, E.: On the mechanics of thin films and growing surfaces: Mathematics and Mechanics of Solids

[13/02]
Marston, J.O.; Sprittles, J.E.; Zhu, Y.; Li, E.Q.; Vakarelski, I.U.; Thoroddsen, S.T.: Drop spreading and penetration into pre-wetted powders: Journal of Powder Technology

[13/01]
Goriely, A.; Tabor, M.: Rotation, inversion, and perversion in anisotropic elastic cylindrical tubes and membranes: Proceedings of The Royal Society A


2012 Preprints and publications

Top of page

[12/115]
Moulton D. E., Goriely A.: Mathematicians at the Movies: Sherlock Holmes vs. Professor Moriarty: Book

[12/114]
Rockstroh P., März T., Ruuth S. J.: An embedding technique for the solution of reaction-diffusion equations on algebraic surfaces with isolated singularities:

[12/113]
Bosch J., Stoll M., Benner P.: Fast solution of Cahn-Hilliard variational inequalities using implicit time discretization and finite elements: Journal of Computational Physics

[12/112]
Muraro D., Pound M., Help H., Lucas M., Chopard J., Byrne H., Godin C., Hodgman C., King J., Pridmore T., Helariutta Y., Bennett M., Bishopp A.: The integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots: Proceedings of the National Academy of Sciences of the United States of America

[12/111]
Jain H. V., Richardson A., Meyer-Hermann M., Byrne H. M.: Exploiting the synergy between carboplatin and ABT-737 in the treatment of ovarian carcinomas: PLOS One

[12/110]
Erban R., Flegg M. B., Papoian G. A.: Multiscale stochastic reaction-diffusion modelling: application to actin dynamics in filopodiaBulletin of Mathematical Biology

[12/109]
Melnik A. V., Goriely A.: Dynamics of mechanically induced fiber reorientation in the material reinforced by two families of fibers

[12/108]
Tavener S., Wildey T.: Adjoint based a posteriori analysis of multiscale mortar discretizations with multinumerics: SIAM Journal on Scientific Computing

[12/107]
Sprittles J. E., Shikhmurzaev Y. D.: Coalescence of Liquid Drops Different Models Versus Experiment: Physics of Fluids

[12/106]
Paetsch C., Dorfmann L.: Non-linear modeling of active biohybrid materials: International Journal of Non-Linear Mechanics

[12/105]
Pancheri F. Q., Dorfmann L.: Strain controlled biaxial stretch: An experimental characterization of natural rubber: International Journal of Nonlinear Mechanics

[12/104]
Moore M. R., Ockendon J. R., Oliver J. M.: Air-cushioning in impact problems: IMA Journal of Applied Mathematics

[12/103]
Griffiths I. M., Howell P. D., Shipley R. J.: Control and optimization of solute transport in a porous tube: Physics of Fluids

[12/102]
Allen R., Reis T., Sun S.: A new Lattice Boltzmann equation to simulate density-driven convection of carbon dioxide:

[12/101]
Tsai S. S. H., Griffiths I. M., Stone H. A.: Microfluidic immunomagnetic multi-target sorting – a model for controlling deflection of paramagnetic beads: Lab on a Chip

[12/100]
Bueno-Orovio A., Kay D., Grau V., Rodriguez B.: Nonlocal models of electrical propagation in cardiac tissue electrotonic effects and the modulated dispersion of repolarization: (OCCAM Technical Report)

[12/99]
Wake G. C., Byrne H. M.: Calculus from the past: multiple delay systems arising in cancer cell modelling: The ANZIAM Journal

[12/98]
deBotton G., Bustamante R., Dorfmann A.: Axisymmetric bifurcations of thick spherical shells under inflation and compression: International Journal of Solids and Structures

[12/97]
Muraro D., Voß U., Wilson M., Bennett M., Byrne H. M., de Smet I., Hodgman C., King J.: Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana: IEEE/ACM Transactions on Computational Biology and Bioinformatics

[12/96]
Byrne H. M.: Mathematical biomedicine and modeling avascular tumor growth: Book

[12/95]
Figueredo G., Joshi T., Osborne J., Byrne H. M., Owen M.: On-lattice agent-based simulation of populations of cells within the open-source chaste framework: Interface Focus

[12/94]
Hall C. L., Vella D., Goriely A.: The mechanics of a chain or ring of spherical magnets: SIAM Journal on Applied Mathematics

[12/93]
Bruna M., Chapman S. J.: Diffusion of multiple species with excluded-volume effects: Journal of Chemical Physics  

[12/92]
Curtis M. P., Gaffney E. A.: The three sphere swimmer in a nonlinear viscoelastic medium: Physical Review E

[12/91]
Majumdar A., Pisante A., Henao D.: Biaxial defect cores in nematic equilibria an asymptotic result:

[12/90]
Majumdar A., Ockendon J. R., Howell P. D., Surovyatkina E.: Transitions through Critical Temperatures in Nematic Liquid Crystals: Physical Review Ejavascript:;

[12/89]
Vigolo D., Griffiths I. M., Radl S., Stone H. A.: An experimental and theoretical investigation of particle–wall impacts in a T-junction: Journal of Fluid Mechanics

[12/88]
Morgan C. E., Breward C. J. B., Griffiths I. M., Howell P. D., Penfold J., Thomas R. K., Tucker I., Petkov J. T., Webster J. R. P.: The kinetics of surfactant desorption at the air–solution interface: Langmuir

[12/87]
Taroni M., Breward C. J. W., Cummings L. J., Griffiths I. M.: Asymptotic solutions of glass temperature profiles during steady optical fibre drawing: Journal of Engineering Mathematics

[12/86]
Lovrics A., Yu G., Juhász B., Bock I., Byrne H. M., Dinnyés A., Kovács K. A.: Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord: PLOS One

[12/85]
Schlackow M., Marguerat S., Proudfoot N. J., Bähler J., Erban R., Gullerova M.: Global and Functional Analyses of 3’ UTRs in Schizosaccharomyces pombe: RNA

[12/84]
Mirams G. R., Arthurs C. J., Bernabeu M. O., Bordas R., Cooper J., Corrias A., Davit Y., Dunn S.-J., Fletcher A. G., Harvey D. G, Marsh M. E., Osborne J. M., Pathmanathan P., Pitt-Francis J., Southern J., Zemzemi N., Gavaghan D. J.: Chaste: an open source C++ library for computational physiology and biology: PLoS Computational Biology

[12/83]
Connor A. J., Cooper J., Byrne H. M., Maini P. K., McKeever S.: Object-oriented paradigms for modelling vascular tumour growth: a case study: Conf Paper

[12/82]
Griffiths I. M., Breward C. J. W., Colegate D. M., Dellar P. J., Howell P. D., Bain C. D.: A new pathway for the re-equilibration of micellar surfactant solutions: Soft Matter

[12/81]
 
[12/80]
 
[12/79]
 
[12/78]
 
[12/77]
 
[12/76]

[12/75]
Whiteley J. P., Tavener S. J.: Error estimation and adaptivity for incompressible, non–linear (hyper–)elasticity:

[12/74]
Majumdar A., Goriely A.: Static and dynamic stability results for a class of three-dimensional configurations of Kirchhoff elastic rods: Physica D

[12/73]
Furati K. M.: Bounds on the solution of a Cauchy-type problem involving a weighted sequential fractional derivative: Fractional Calculus and Applied Analysis

[12/72]
Güttel S., Pestana J.: Some observations on weighted GMRES: Numerical Algorithms

[12/71]
Goriely A., Moulton D.: The Mathematics Behind Sherlock Holmes: A Game of Shadows: SIAM News

[12/70]
McNamara H.: An estimate of energy dissipation due to soil-moisture hysteresis: Water Resources Research

[12/69]
Cross R., McNamara H., Kalachev L., Pokrovskii A.: Memory of recessions: Journal of Post Keynesian Economics

[12/68]
Vella D., Ajdari A., Vaziri A., Boudaoud A.: Indentation of ellipsoidal and cylindrical elastic shells: Physical Review Letters

[12/67]
Aumaitre E., Knoche S., Cicuta P., Vella D.: Wrinkling in the deflation of elastic bubbles: The European Physical Journal E

[12/66]
Moulton D. E., Lessinnes T., Goriely A.: Morphoelastic rods Part 1: A single growing elastic rod: Journal of the Mechanics and Physics of Solids

[12/65]
Hadjimichael Y., Macdonald C. B., Ketcheson D. I., Verner J. H.: Strong stability preserving explicit Runge-Kutta methods of maximal effective order: SIAM Journal on Numerical Analysis

[12/64]
Menon S. N., Hall C. L., McCue S. W., McElwain D. L. S.: A model for one-dimensional morphoelasticity and its application to fibroblast-populated collagen lattices:  (OCCAM Technical Report)

[12/63]
Muraro D., Byrne H. M., King J. R., Bennett M. J.: Mathematical modelling plant signalling networks: Mathematical Modelling of Natural Phenomena

[12/62]
Soulaine C., Davit Y., Quintard M.: A two-pressure model for slightly compressible single phase flow in bi-structured porous media: Chemical Engineering Science

[12/61]
Leslie G. A., Wilson S. K., Duffy B. R.: Three-dimensional coating and rimming flow: a ring of fluid on a rotating horizontal cylinder: Journal of Fluid Mechanics

[12/60]
Chen W., Erban R., Chapman S. J.: From Brownian dynamics to Markov chain: an ion channel example: SIAM Journal on Applied Mathematics

[12/59]
Mihai L. A., Goriely A.: Numerical simulation of shear and the Poynting effects by the finite element method: An application of the generalised empirical inequalities in non-linear elasticity: International Journal of Nonlinear Mechanics

[12/58]
Franz B., Flegg M. B., Chapman S. J., Erban R.: Multiscale reaction-diffusion algorithms: pde-assisted Brownian dynamics: SIAM Journal on Applied Mathematics

[12/57]
Zhu S.-X.: Compactly supported radial basis functions: how and why?:

[12/56]
Shikhmurzaev Y. D., Sprittles J. E.: On the anomalous dynamics of capillary rise in porous media: Physical Review E

[12/55]
Leslie G. A., Wilson S. K., Duffy B. R.: Thermoviscous coating and rimming flow: Quarterly Journal of Mechanics and Applied Mathematics

[12/54]
McArdle C. R., Pritchard D., Wilson S. K.: The Stokes boundary layer for a thixotropic or antithixotropic fluid:  Journal of Non-Newtonian Fluid Mechanics

[12/53]
Sullivan J. M., Paterson C., Wilson S. K., Duffy B. R.: A thin rivulet or ridge subject to a uniform transverse shear stress at its free surface due to an external airflow: Physics of Fluids

[12/52]
Davit Y., Osborne J. M., Byrne H. M., Gavaghan D., Pitt-Francis J. M.: Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues: Physical Review E

[12/51]
Zubkov V. S., Breward C. J. W., Gaffney E. A.: Meniscal tear film fluid dynamics near Marx’s line: Bulletin of Mathematical Biology

[12/50]
Bueno-Orovio A., Kay D., Burrage K.: Fourier spectral methods for fractional-in-space reaction-diffusion equations: BIT Numerical Mathematics

[12/49]
Majumdar A.: The mathematics of liquid crystals  analysis, computation and applications: British Liquid Crystal Society Newsletter 2012

[12/48]
Séguis J. - C., Burrage K., Erban R., Kay D.: Simulation of cell movement through evolving environment: a fictitious domain approach: (OCCAM Technical Report)

[12/47]
Farmer C. L.: An ensemble Bayesian filter for state estimation: (OCCAM Technical Report)

[12/46]
Webber M. A., Bressloff P. C.: The effects of noise on binocular rivalry waves: a stochastic neural field model: Journal of Statistical Mechanics: Theory and Experiment

[12/45]
Bressloff P. C., Newby J. M.: Stochastic models of intracellular transport: Reviews of Modern Physics

[12/44]
Wagner T. J. W., Vella D.: The ‘Sticky Elastica’: Delamination blisters beyond small deformations: Soft Matter

[12/43]
Paterson C., Wilson S. K., Duffy B. R.: Gravity-driven draining of a thin rivulet with constant width down a slowly varying substrate: (OCCAM Technical Report)

[12/42]
Knox D. J., Wilson S. K., Duffy B. R., McKee S.: Porous squeeze-film flow: IMA Journal of Applied Mathematics

[12/41]
Piret C.: The orthogonal gradients method: a radial basis functions method for solving partial differential equations on arbitrary surfaces: Journal of Computational Physics

[12/40]
Fowkes J. M., Gould N. I. M., Farmer C. L.: A branch and bound algorithm for the global optimization of Hessian Lipschitz continuous functions: Journal of Global Optimization

[12/39]
Taroni M., Breward C. J. W., Howell P. D., Oliver J. M.: Boundary conditions for free surface inlet and outlet problems: Journal of Fluid Mechanics

[12/38]
Bressloff P. C., Lai Y. M.: Dispersal and noise: various modes of synchrony in ecological oscillators: Journal of Mathematical Biology

[12/37]
Sprittles J. E., Shikhmurzaev Y. D.: The dynamics of liquid drops and their interaction with solids of varying wettabilities: Physics of Fluids

[12/36]
Sprittles J. E., Shikhmurzaev Y. D.: Finite element simulation of dynamic wetting flows as an interface formation process: Journal of Computational Physics

[12/35]
Peppin S. S. L., Style R. S.: The physics of frost heave and ice-lens growth: Vadose Zone Journal

[12/34]
Wagner T. J. W., Vella D.: The sensitivity of Graphene ‘Snap-through’ to substrate geometry: Applied Physics Letters

[12/33]
Abdulle A., Vilmart G., Zygalakis K. C.: Second weak order explicit stabilized methods for stiff stochastic differential equations: SIAM Journal on Scientific Computing

[12/32]
Moore M. R., Howison S. D., Ockendon J. R., Oliver J. M.: Three-dimensional oblique water-entry problems at small deadrise angles: Journal of Fluid Mechanics

[12/31]
Chirat R., Moulton D. E., Goriely A.: Mechanical basis of morphogenesis and convergent evolution of spiny seashells: PNAS

[12/30]
Mirams G. R., Fletcher A. G., Maini P. K., Byrne H. M.: A theoretical investigation of the effect of proliferation and adhesion on monoclonal conversion in the colonic crypt: Journal of Theoretical Biology

[12/29]
Kershaw S. K., Byrne H. M., Gavaghan D. J., Osborne J. M.: Colorectal cancer through simulation and experiment: IET Systems Biology

[12/28]
Aragón J. L., Barrio R. A., Woolley T. E., Baker R. E., Maini P. K.: Nonlinear effects on Turing patterns: time oscillations and chaos: Physical Review Letters

[12/27]
O'Dea R. D., Osborne J. M., El Haj A. J., Byrne H. M., Waters S. L.: The interplay between tissue growth and scaffold degradation in engineered tissue constructs: Journal of Mathematical Biology

[12/26]
Collins-Hooper H., Woolley T. E.,  Dyson L., Patel A., Potter P., Baker R. E., Gaffney E. A., Maini P. K., Dash P. R., Patel K.: Age related changes in speed and mechanism of adult skeletal muscle stem cell migration: Stem Cells

[12/25]
Reis T., Wilson H. J.: Rolie-Poly fluid flowing through constrictions: Two distinct instabilities: Journal of Non-Newtonian Fluid Mechanics

[12/24]
Davit Y., Wood B. D., Debenest G., Quintard M.: Correspondence between one- and two-equation models for solute transport in two-region heterogeneous porous media: Transport in Porous Media

[12/23]
Reis T., Dellar P. J.: Lattice Boltzmann simulations of pressure-driven flows in microchannels using Navier–Maxwell slip boundary conditions: Physics of Fluids

[12/22]
Hale N., Trefethen L. N.: Chebfun and numerical quadrature: Science in China Series A-Mathematics

[12/21]
Hubbard M. E., Byrne H. M.: Multiphase modelling of vascular tumour growth in two spatial dimensions: Journal of Theoretical Biology

[12/20]
Taroni M., Vella D.: Multiple equilibria in a simple elastocapillary system: Journal of Fluid Mechanics

[12/19]
März T., Macdonald C.: Calculus on surfaces with general closest point functions: SIAM Journal on Numerical Analysis

[12/18]
Moore M. R., Howison S. D., Ockendon J. R., Oliver J. M.: A note on oblique water entry: Journal of Engineering Mathematics

[12/17]
Yavari A., Goriely A.: Weyl geometry and the nonlinear mechanics of distributed point defects: Proceedings of the Royal Society A

[12/16]
Cotter S. L., Robers G. O., Stuart A. M., White D.: MCMC methods for functions: modifying old algorithms to make them faster: Statistical Science

[12/15]
Lewis M. A., Li B.: Spreading speed, travelling waves, and minimal domain size in impulsive reaction-diffusion models: Bulletin of Mathematical Biology

[12/14]
Potapov A., Merrill E., Lewis M. A.: Wildlife disease elimination and density dependence: Proceedings of the Royal Society B

[12/13]
Title and authors withheld until publication

[12/12]
Wheeler J. D., Bampfylde C. J., Lewis M. A.: Modelling temperature-dependent larval development and subsequent demographic allee effects in adult populations of the alpine butterfly Parnassius smintheus:

[12/11]
Krkošek M., Ashander J., Lewis M. A.: Parasite spill-back from domestic hosts may induce an Allee effect in wildlife hosts: The American Naturalist

[12/10]
Krkošek M., Connors B. M., Lewis M. A., Poulin R.: Allee effects may slow the spread of parasites in a coastal marine ecosystem: The American Naturalist

[12/09]
Jain H. V., Moldovan N. I., Byrne H. M.: Modeling stem/progenitor cell-induced neovascularization and oxygenation around solid implants: Tissue Engineering, Part C: Methods

[12/08]
Jain H. V., Byrne H. M.: Qualitative analysis of an integro-differential equation model of periodic chemotherapy: Applied Mathematics Letters

[12/07]
Griffiths I. M., Stone H. A.: Axial dispersion via shear-enhanced diffusion in colloidal suspensions: EPL

[12/06]
Woolley T. E., Baker  R. E., Gaffney E. A., Maini P. K., Seirin-Lee S.: Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems: Physical Review E

[12/05]
Davit Y., Byrne H., Osborne J., Pitt-Francis J., Gavaghan D., Quintard M.: Hydrodynamic dispersion within porous biofilms: Physical Review E

[12/04]
Iyer G., Zygalakis K. C.: Numerical studies of homogenization under a fast cellular flow: SIAM Journal on Multiscale Modeling and Simulation

[12/03]
Prior C. B., Goriely A.: The Fourier transform of tubular densities: Journal of Physics A-Mathematical and Theoretical

[12/02]
McKenzie H. W., Merrill E. H., Spiteri R. J., Lewis M. A.: How linear features alter predator movement and the functional response: Journal of the Royal Society Interface Focus

[12/01]
Moulton D. E., Goriely A., Chirat R.: Mechanical growth and morphogenesis of seashells: Journal of Theoretical Biology


2011 Preprints and publications

Top of page

[11/74]
Yavari A., Goriely A.: Riemann-Cartan geometry of nonlinear disclination mechanics: Mathematics and Mechanics of Solids

[11/73]
Bressloff P. C., Newby J. M.: Filling of a Poisson trap by a population of random intermittent searchers:

[11/72]
Henao D., Majumdar A.: Symmetry of uniaxial global Landau-de Gennes minimizers in the theory of nematic liquid crystals: SIAM Journal on Mathematical Analysis

[11/71]
Kimpton L. S., Whiteley J. P., Waters S. L., King J. R., Oliver J. M.: Multiple travelling-wave solutions in a minimal model for cell motility : Mathematical Medicine and Biology

[11/70]
Cooray H., Cicuta P., Vella D.: The capillary interaction between two vertical cylinders: Journal of Physics: Condensed Matter

[11/69]
Giomi L., Bowick M. J., Ma X., Majumdar A.: Molecular tilt on monolayer-protected nanoparticles: A Letters Journal Exploring the Frontiers of Physics

[11/68]
Davit Y., Quintard M.: Comment on “Frequency-dependent dispersion in porous media”: Physical Review E

[11/67]
Please C. P., Fulford G. R., McElwain D. L. S., Collins M. J.: Tear film thickness variations and the role of the tear meniscus:

[11/66]
Prior C., Berger M. A.: On the shape of force-free field lines in the solar corona: Solar Physics

[11/65]
Cotter S. L., Vejchodský T., Erban  R.: Adaptive finite element method assisted by stochastic simulation of chemical systems: SIAM Journal on Scientific Computing

[11/64]
Majumdar A., Prior C., Goriely A.: Stability estimates for a twisted rod under terminal loads a three-dimensional study: Journal of Elasticity

[11/63]
Bressloff P. C., Webber M.: Front propagation in stochastic neural fields: SIAM Journal on Applied Dynamical Systems

[11/62]
Bressloff P. C., Webber M.: Neural field model of binocular rivalry waves: Journal of Computational Neuroscience

[11/61]
Richardson G., Please C. P., Kirkpatrick J.: Asymptotic solution of a model for bilayer organic diodes and solar cells: SIAM Journal on Applied Mathematics

[11/60]
Cotter C. J., Cotter S. L., Vialard F. X.: Bayesian data assimilation in shape registration: Inverse Problems

[11/59]
Goriely A., Neukirch S., Hausrath A.: Helices through 3 or 4 points?:

[11/58]
Yavari A., Goriely A.: Riemann-Cartan Geometry of nonlinear dislocation mechanics: Archive for Rational Mechanics and Analysis

[11/57]
Newby, J. M.: Isolating intrinsic noise sources in a stochastic genetic switch: Physical Biology

[11/56]
Auer S., Macdonald C. B., Treib M., Schneider J., Westermann R.: Real-time fluid effects on surfaces using the Closest Point Method: Computer Graphics Forum

[11/55]
Luo C., Majumdar A., Erban R.: The dynamics of bistable liquid crystal wells:  Physical Review E

[11/54]
Hennessy M. G., Münch A.: Multiple-scale analysis of evaporation induced Marangoni convection: SIAM Journal on Applied Mathematics

[11/53]
Moulton D. E., Goriely A.: Surface growth kinematics via local curve evolution: Journal of Mathematical Biology

[11/52]
März T.: Image inpainting based on coherence transport with adapted distance functions: SIAM Journal on Imaging Sciences

[11/51]
Du Q., Gunzburger M., Lehoucq R. B., Zhou K.: A nonlocal vector calculus, nonlocal volume-constrained problems, and nonlocal balance laws: Mathematical Models and Methods in Applied Sciences

[11/50]
Flegg J. A., Byrne H. M., Flegg M. B., McElwain D. L. S.: Wound healing angiogenesis: the clinical implications of a simple mathematical model: Journal of Theoretical Biology

[11/49]
Style R., Peppin S. S. L.: The kinetics of ice-lens growth in porous media: Journal of Fluid Mechanics

[11/48]
Abdulle A., Cohen D., Vilmart G., Zygalakis K. C.: High order weak methods for stochastic differential equations based on modified equations: SIAM Journal on Scientific Computing

[11/47]
Lai Y. M., Newby J., Bressloff P. C.: Effects of demographic noise on the synchronization of a metapopulation in a fluctuating environment: Physical Review Letters

[11/46]
Murphy K. E., Hall C. L., Maini P. K., McCue S. W., McElwain D. L. S.: A two-compartment mechanochemical model of the roles of transforming growth factor β and tissue tension in dermal wound healing: Journal of Theoretical Biology

[11/45]
Murphy K. E., Hall C. L., Maini P. K., McCue S. W., McElwain D. L. S.: A fibrocontractive mechanochemical model of dermal wound closure incorporating realistic growth factor kinetics: Bulletin of Mathematical Biology

[11/44]
Davidovitch B., Schroll R. D., Vella D., Adda-Bedia M., Cerda E.: A prototypical model for tensional wrinkling in thin sheets: Proceedings of the National Academy of Sciences of the United States of America

[11/43]
Zubkov V. S., Breward C. J. W., Gaffney E. A.: Coupling fluid and solute dynamics within the ocular surface tear film a modelling study of black line osmolarity: Bulletin of Mathematical Biology

[11/42]
Burrage K., Hale N., Kay D.: An efficient implementation of an implicit FEM scheme for fractional-in-space reaction-diffusion equations: SIAM Journal on Numerical Analysis

[11/41]
Smith N. A. S., Peppin S. S. L., Ramos A. M.:  Generalized enthalpy model of a high pressure shift freezing process: Proceedings of the Royal Society A

[11/40]
Székely Jr. T., Burrage K., Erban R., Zygalakis K. C.: Higher-order numerical methods for stochastic simulation of chemical reaction systems: BMC Systems Biology

[11/39]
Griffiths I. M., Bain C. D., Breward C. J. W., Chapman S. J., Howell P. D., Waters S. L.: An asymptotic theory for the re-equilibration of a micellar surfactant solution: SIAM Journal of Applied Mathematics

[11/38]
Style R. W., Cocks A. C. F., Peppin S. S. L., Wettlaufer J. S.: Ice-lens formation and confinement-induced supercooling in soils and other colloidal materials: Physical Review E

[11/37]
Neukirch S., Frelat J., Goriely A., Maurinia C.: Frequency jumps in the planar vibrations of an elastic beam: Journal of Sound and Vibration

[11/36]
Zygalakis K. C., Roose T.: A simple mathematical model for investigating the effect of cluster roots on plant nutrient uptake: European Journal of Physics Special Topics

[11/35]
Curtis M. P., Kirkman-Brown J. C., Connolly T. J., Gaffney E. A.: Modelling a tethered mammalian sperm cell undergoing hyperactivation: Journal of Theoretical Biology

[11/34]
Luo X., Hoteit I., Duan L., Wang W.: Review of nonlinear Kalman, ensemble and particle filtering with application to the reservoir history matching problem: Nonlinear Estimation and Applications to Industrial Systems Control (Book)

[11/33]
Duan L., Farmer C., Hoteit I., Luo X., Moroz I.: Data assimilation using bayesian filters and B-spline geological models: Institute of Physics: Conference Series

[11/32]
Vella D., Ajdari A., Vaziri A., Boudaoud A.: Wrinkling of pressurized elastic shells: Physical Review Letters 

[11/31]
Vella D., Ajdari A., Vaziri A., Boudaoud A.: The indentation of pressurized elastic shells: From polymeric capsules to yeast cells: Journal of the Royal Society Interface

[11/30]
Luo C., Calderer M. C.: Numerical study of liquid crystal elastomers by a mixed finite element method: European Journal of Applied Mathematics

[11/29]
Wagner T. J. W., Vella D.: Floating carpets and the delamination of elastic sheets: Physical Review Letters

[11/28]
Loessner D., Flegg J., Byrne H., Hall C., Moroney T., Clements J., McElwain D., Hutmacher D.: Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach: (OCCAM Technical Report)

[11/27]
Elliott J. A. W., Peppin S. S. L.: Particle trapping and banding in rapid colloidal solidification: Physical Review Letters

[11/26]
Burlakov V. M., Emptage N., Goriely A., Bressloff P. C.: Synaptic bistability due to nucleation and evaporation of receptor clusters: Physical Review Letters

[11/25]
Quezada de Luna M., Đuričković B., Goriely A.: Nonlinear waves in heterogeneous elastic rods via homogenization: International Journal of Nonlinear Mechanics

[11/24]
Hall C., Markenscoff X.: On approaches to modelling lattice dislocations: (OCCAM Technical Report)

[11/23]
Mihai L. A., Goriely A.: Positive or negative Poynting effect?  The role of adscititious inequalities in hyperelastic materials: Proceedings of the Royal Society

[11/22]
Menon S. N., Hall C. L., McCue S. W., McElwain D. L. S.: A novel model for one-dimensional morphoelasticity. Part II - Application to the contraction of fibroblast-populated collagen lattices: (OCCAM Technical Report)

[11/21]
Hall C. L., Menon S. N., McCue S. W., McElwain D. L. S.: A novel model for one-dimensional morphoelasticity. Part I - Theoretical foundations: (OCCAM Technical Report)

[11/20]
Franz B., Erban R.: Hybrid modelling of individual movement and collective behaviour: Dispersal, individual movement and spatial ecology: A mathematical perspective (book chapter)

[11/19]
Keener J. P., Newby J. M.: A perturbation analysis of spontaneous action potential initiation by stochastic ion channels: Physical Review E

[11/18]
Hall C. L.: Asymptotic analysis of a pile-up of edge dislocation: Materials Science and Engineering A

[11/17]
Soon Y. W., Clarke T. M., Zhang W., Agostinelli T., Kirkpatrick J., Dyer-Smith C., McCulloch I., Nelson J., Durrant J. R.: Energy versus electron transfer in organic solar cells: a comparison of the photophysics of two indenofluorene: fullerene blend films: Chemical Science

[11/16]
Kirchartz T., Pieters B. E., Kirkpatrick J., Rau U., Nelson J.: Recombination via tail states in polythiophene:fullerene solar cells: Physical Review B

[11/15]
Flegg M. B., Chapman S. J., Erban R.: The Two Regime method for optimizing stochastic reaction-diffusion simulations: Proceedings of the National Academy of Sciences

[11/14]
Cotter S. L., Zygalakis K. C., Kevrekidis I. G., Erban R.: A constrained approach to multiscale stochastic simulation of chemically reacting systems: Journal of Chemical Physics

[11/13]
Bressloff P. C., Newby J. M.: Quasi-steady state analysis of two-dimensional random intermittent search processes: Physical Review E

[11/12]
Klika V., Baker R. E., Headon D., Gaffney E. A.: The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation: Bulletin of Mathematical Biology

[11/11]
Braun R. J.: Dynamics of the tear film: Annual Review of Fluid Mechanics

[11/10]
Griffiths I. M., Bain C. D., Breward C. J. W., Colegate D. M., Howell P. D., Waters S. L.: On the predictions and limitations of the Becker–Doring model for reaction kinetics in micellar surfactant solutions: Journal of Colloid and Interface Science

[11/09]
McNamara H., Bower G., Dellar P. J.: A locally adaptive time-stepping algorithm for petroleum reservoir simulations: (OCCAM Technical Report)

[11/08]   
Cross R., McNamara H., Kalachev L., Pokrovskii A.: Hysteresis and Post Walrasian Economics: Discrete & Continuous Dynamical Systems Series B

[11/07]
Ketcheson D. I., Gottlieb S., Macdonald C. B.: Strong stability preserving Two-Step Runge-Kutta Methods: SIAM Journal on Numerical Analysis

[11/06]
Fornberg B., Weideman J. A. C.: A Numerical Methodology for the Painlevé Equations: Journal of Computational Physics

[11/05]
Macdonald C., Brandman J., Ruuth S. J.: Solving Eigenvalue Problems on Curved Surfaces: Journal of Computational Physics

[11/04]
Erban R., Haskovec, J.: From individual to collective behaviour of coupled velocity jump processes - a locust example: Kinetic and Related Models

[11/03]
Goriely A., Tabor M.: Spontaneous rotational inversion in Phycomyces: Physical Review Letters

[11/02]
Epstein M., Goriely A.: Self-diffusion in remodelling and growth: Zeitschrift für angewandte Mathematik und Physik

[11/01]
Lippok N., Nielsen P., Vanholsbeeck F.: Fluctuations and instability in sedimentation: Optics Express


2010 Preprints and publications

Top of page

[10/66]
Spannuth M.,  Mochrie S. G. J., Peppin S. S. L., Wettlaufer J. S.: Dynamics of colloidal particles in ice: Journal of Chemical Physics

[10/65]
Bruna M., Chapman S. J.: Excluded-volume effects in the diffusion of hard spheres: Physical Review E
 
[10/64]
Kirkpatrick, J.: Hot Charge Pairs and Charge Generation in Donor Acceptor Blends: (OCCAM Technical Report)

[10/63]
Zygalakis K. C., Kirk G. J. D., Jones D. L., Wissuwa M., Roose T.:  A dual porosity model of nutrient uptake by root hairs: New Phytologist

[10/62]
Oburger E., Leitner D., Jones D. L., Zygalakis K. C., Schnepf A., Roose T.:  Adsorption and desorption dynamics of citric acid anions in soil: European Journal of Soil Science

[10/61]
Bressloff P.: Metastable states and quasicycles in a stochastic Wilson-Cowan model of neuronal population dynamics: Physical Review E

[10/60]
Bressloff P., Lai Y. M.:  Stochastic synchronization of neuronal populations with intrinsic and extrinsic noise: Journal Mathematical Neuroscience
 
[10/59]
Münch A., Please C. P., Wagner B.:  Spin coating of an evaporating polymer solution: Physics of Fluids

[10/58]
Spannuth M., Mochrie S. G. J., Peppin S. S. L., Wettlaufer J. S.: Particle-scale structure in frozen colloidal suspensions from small angle X-ray scattering: Physical Review E.

[10/57]
Pathmanathan P., Bernabeu M. O., Bordas R., Cooper J., Garny A., Pitt-Francis J. M., Whiteley J. P., Gavaghan D. J.:  A numerical guide to the solution of the bidomain equations of cardiac electrophysiology: Progress in Biophysics and Molecular Biology

[10/56]
Osborne J. M., O'Dea R. D., Whiteley J. P., Byrne H. M., Waters S. L.:  The Influence of Bioreactor Geometry and the Mechanical Environment on Engineered Tissues: ASME Journal of Biomechanical Engineering

[10/55]
Destrade M., Goriely A., Saccomandi G.:  Scalar evolution equations for shear waves in incompressible solids: A simple derivation of the Z, ZK, KZK, and KP equations: Proceedings of the Royal Society A

[10/54]
Loessner D., Flegg J. A., Byrne H. M. Hall C. L., Moroney T. J., Clements J. A., Hutmacher D. W., McElwain D. L. S.: Modeling the growth of multicellular cancer spheroids in a bioengineered 3D microenvironment and their treatment with an anti-cancer drug: (OCCAM Technical Report)
 
[10/53]
Majumdar A.:  Liquid Crystal Theory and Modelling: Discussion Meeting: Liquid Crystals Today
 
[10/52]
Majumdar A.:  Order parameters in the Landau-de Gennes theory - the static and dynamic scenarios: Liquid Crystals

[10/51]
Klingbeil G., Erban R., Giles M., Maini P. K.:  STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB: Bioinformatics
 
[10/50]
Flynn C., Rubin M. B., Nielsen P.: A model for the anisotropic response of fibrous soft tissues using six discrete fibre bundles: International Journal for Numerical Methods in Biomedical Engineering

[10/49]
Cotter S. L., Dashti M., Robinson J. C., Stuart A. M.: Variational Data Assimilation Using Targetted Random Walks: International Journal for Numerical Methods in Fluids

[10/48]
Moulton D. E., Goriely A.: Possible role of differential growth in airway wall remodeling in asthma: Journal of Applied Physiology

[10/47]
Stoll M., Wathen A.: All-at-once solution of time-dependent PDE-constrained optimization problems: (OCCAM Technical Report)

[10/46]
Bressloff P. C., Oster A. M.: A theory for the alignment of cortical feature maps during development: Physical Review E

[10/45]
Kilpatrick Z. P., Bressloff P. C.: Binocular Rivalry in a Competitive Neural Network with Synaptic Depression: SIAM Applied Dynamical Systems

[10/44]
Style R. W., Peppin S. S. L., Cocks A. C. F.: Mud peeling and horizontal crack formation in drying clays: Journal of Geophysical Research: Earth Surface

[10/43]
Chapman S. J., Lottes J., Trefethen L. N.: Four Bugs on a Rectangle: Proceedings of the Royal Society A

[10/42]
Motamed M., Macdonald C. B., Ruuth S. J.: On the Linear Stability of the Fifth-Order WENO Discretization: Journal of Scientific Computing

[10/41]
Goswami D., Pani A. K., Yadav S.: Optimal Error Estimates of a Mixed Finite Element Method for Parabolic Integro-Differential Equations with Non Smooth Initial Data: Journal of Scientific Computing

[10/40]
McKibbin R., Hale N., Style R., Walters N.: Convection and heat transfer in layered sloping warm-water aquifers: Journal of Porous Media

[10/39]
Newby J., Bressloff P. C.: Local synaptic signaling enhances the stochastic transport of motor-driven cargo in neurons: Physical Biology

[10/38]
Stoll M., Wathen A.: Preconditioners for state constrained optimal control problems with Moreau-Yosida penalty function: Numerical Linear Algebra with Applications

[10/37]
Moulton D. E., Goriely A.: Circumferential buckling instability of a growing cylindrical tube: Journal of the Mechanics and Physics of Solids

[10/36]
Duan L., Farmer C. L., Moroz I. M.: Sequential Inverse Problems Bayesian Principles and the Logistic Map Example: 8th International Conference of Numerical Analysis and Applied Mathematics 2010

[10/35]
Duan L., Farmer C. L., Moroz I. M.: Regularized Particle Filter with Langevin Resampling Step: 8th International Conference of Numerical Analysis and Applied Mathematics 2010

[10/34]
Reis T., Dellar P.: A random projection method for sharp phase boundaries in lattice Boltzmann simulations: Proceedings of the 12th European Conference for the Mathematics of Oil Recovery

[10/33]
Whiteley J. P., Gillow K., Tavener S. J., Walter A. C.: Error bounds on block Gauss–Seidel solutions of coupled multiphysics problems: International Journal for Numerical Methods in Engineering

[10/32]
Gadêlha H., Gaffney E. A., Smith D. J., Kirkman-Brown J. C.: Nonlinear instability in flagellar dynamics: a novel modulation mechanism in sperm migration?: Journal of the Royal Society Interface

[10/31]
Majumdar A.: The Radial-Hedgehog Solution in Landau-de Gennes'  theory: European Journal of Applied Mathematics

[10/30]
Majumdar A.: The Landau-de Gennes theory of nematic liquid crystals: Uniaxiality versus Biaxiality: Communications in Pure and Applied Analysis

[10/29]
Goswami D., Pani A. K.: A Priori Error Estimates for Semidiscrete Finite Element Approximations to Equations of Motion Arising in Oldroyd Fluids of Order One: International Journal of Numerical Analysis and Modeling

[10/28]
Memon S., Nataraj N., Pani A. K.: An a posteriori error analysis of a mixed finite element Galerkin approximation to second order linear parabolic problems: SIAM Journal on Numerical Analysis

[10/27]
Benilov E. S., Chapman S. J., Mcleod J. B., Ockendon J. R., Zubkov V. S.: On Liquid Films on an Inclined Plate: Journal of Fluid Mechanics

[10/26]
Ellis A. S., Fowler A. C.: On an evolution equation for sand dunes: (OCCAM Technical Report)

[10/25]
Blank L., Sarbu L., Stoll M.: Preconditioning for Allen-Cahn Variational Inequalities with Non-Local Constraints: Journal of Computational Physics

[10/24]
Hall C. L., Band L. R., Richardson G., Jensen O. E., Siggers J. H., Foss: Intracellular Flow in Optic Nerve Axons: A Mechanism for Cell Death in Glaucoma: Conference presentation for EUROMECH 2010

[10/23]
Hall C. L., Chapman S. J., Ockendon J. R.: Asymptotic analysis of a system of algebraic equations arising in dislocation theory: SIAM Journal of Applied Mathematics

[10/22]
Klingbeil G., Erban R., Giles M., Maini P. K.: Fat vs. thin threading approach on GPUs application to stochastic simulation of chemical reactions: IEEE Transactions on Parallel & Distributed Systems

[10/21]
Pathmanathan P., Chapman S. J., Gavaghan D. J., Whiteley J. P.: Cardiac Electromechanics The Effect of Contraction Model on the Mathematical Problem and Accuracy of the Numerical Scheme: Quaterly Journal of Mechanics and Applied Mathematics

[10/20]
Hall C. L.: Asymptotic expressions for the nearest and furthest dislocations in a pile-up against a grain boundary: The Philosophical Magazine

[10/19]
Goriely A., Moulton D. E., Vandiver R.: Elastic cavitation, tube hollowing, and differential growth in plants and biological tissues: EuroPhysics Letters

[10/18]
Robertson-Tessi, M., El-Kareh A., Goriely A.: A Mathematical Model of Tumor-Immune Interactions: Journal of Theoretical Biology

[10/17]
Style R. W., Peppin S. S. L.: Crust formation in drying colloidal suspensions: Proceedings of the Royal Society A

[10/16]
Goriely A., Moulton D. E.: The Physics and Mechanics of Biological Systems: Lecture Notes of the Les Houches Summer Schools (Book Chapter)

[10/15]
Xue C., Hwang H. J., Painter K. J., Erban R.: Travelling waves in hyperbolic chemotaxis equations: Bulletin of Mathematical Biology

[10/14]
Lipkovà J., Zygalakis K. C., Chapman, S. J., Erban R.: Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions: SIAM Journal on Applied Mathematics

[10/13]
McMahon J., Goriely A., Tabor M.: Nonlinear Morphoelastic Plates II: Exodus to Buckled States: Mathematics and Mechanics of Solids

[10/12]
McMahon J., Goriely A., Tabor M.: Nonlinear Morphoelastic Plates I: Genesis of Residual Stress: Mathematics and Mechanics of Solids

[10/11]
De Pascalis R., Destrade M., Goriely A.: Nonlinear Correction to the Euler Buckling Formula for Compressible Cylinders: Journal of Elasticity

[10/10]
Goriely A., Vandiver R.: On the mechanical stability of growing arteries: IMA journal of Applied Mathematics

[10/09]
Goriely A., Moulton D. E.: Anticavitation and differential growth in elastic shells: Journal of Elasticity

[10/08]
Reis T., Dellar P. J.: A volume-preserving sharpening approach for the propagation of sharp phase boundaries in multiphase lattice Boltzmann simulations: Computers and Fluids

[10/07]
Majumdar A., Peppin S. S. L., Style R., Sander G.: Frost Heave In Compressible Soils: SIAM Journal on Applied Mathematics

[10/06]
Zygalakis K. C., Roose T.: Derivation of a dual porosity model for the uptake of nutrients by root hairs: (OCCAM Technical Report)

[10/05]
Escudero C., Yates C. A., Buhl J., Couzin I. D., Erban R., Kevrekidis I. G., Maini P. K.: Ergodic directional switching in mobile insect groups: Physical Review E

[10/04]
Newby J., Bressloff P. C.: Random intermittent search and the tug-of-war model of motor-driven transport: Journal of Statistical Mechanics

[10/03]
Kilpatrick Z. P., Bressloff P. C.: Stability of bumps in piecewise smooth neural fields with nonlinear adaptation: Physica D

[10/02]
Hinch E. J.: Determining the equation of state of highly plasticised metals from boundary velocimetry Part II. An inverse problem or not: Journal of Engineering Mathematics

[10/01]
Guazzelli É. and Hinch E. J.: Fluctuations and instability in sedimentation: Annual Reviews of Fluid Mechanics


2009 Preprints and publications

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[09/50]
Gaffney E. A., Gadelha H., Smith D. J., Blake J. R., Kirkman-Brown J. C.: Mammalian Sperm Motility: Observation and Theory: Annual Reviews of Fluid Mechanics

[09/49]
Boston E. A. J., Gaffney E. A.: Incorporating The Influence of Toxicity Constraints in Models of Chemotherapeutic Scheduling: Mathematical Medicine and Biology
 
[09/48]
Cominetti O., Matzavinos A., Samarasinghe S., Kulasiri D., Liu S., Maini P. K., Erban R.:  DifFUZZY: A fuzzy spectral clustering algorithm for complex data sets: International Journal of Computational Intelligence in Bioinformatics and Systems Biology
 
[09/47]
Ppotsepaev R. V., Farmer C. L., Aziz M.:  Stochastic Partial Differential Equations as priors in ensemble methods for solving inverse problems: (OCCAM Technical Report)
 
[09/46]
Yates C. A., Baker R. E., Erban R., Maini P. K.: Refining self-propelled particle models for collective behaviour: Canadian Applied Mathematics Quarterly 

[09/45]
Wright G. B., Flyer N.: A Hybrid Radial Basis Function - Pseudospectral Method for Thermal Convection in a 3-D Spherical Shell :Geophysics, Geochemistry, Geosystems

[09/44]
Finka M., Niederer S. A., Cherry E. M., Fenton F. H., Koivumki J. T., Seemann G., Thul R., Zhang H., Sachse F. B., Beard D., Crampin E. J., Smith N. P.:  Cardiac cell modelling: Observations from the heart of the cardiac physiome project:Progress in Biophysics and Molecular Biology

[09/43]
Lazic S. E.:  Pseudoreplication invalidates the results of many neuroscientific studies:BMC Neuroscience
 
[09/42]
Melykuti B., Burrage K., Zygalakis K. C.:  Fast stochastic simulation of biochemical reaction systems by alternative formulations of the Chemical Langevin Equation: Journal of Chemical Physics
 
[09/41]
Haynes P. H., Hoang V. H., Norris J. R., Zygalakis K. C.:  Homogenization for advection-diffusion in a perforated domain: Probability and Mathematical Genetics: Papers in Honour of Sir John Kingman, LMS Lecture Notes Series (Book)
 
[09/40]
Kilpatrick Z. P., Bressloff P. C.:  Stationary bumps in a piecewise smooth neural field model with synaptic depression:SIAM Journal of Applied Math
 
[09/39]
Kilpatrick Z. P., Bressloff P. C.:    Spatially structured oscillations in a two-dimensional excitatory neuronal network with synaptic depression: Journal of Computational Neuroscience
 
[09/38]
Goswami D., Pani A. K., Yadav S.:  Optimal L2 estimates for semidiscrete Galerkin methods for parabolic integro-differential equations with nonsmooth data: (OCCAM Technical Report)
 
[09/37]
Goswami D., Pani A. K.:  Optimal L2-error estimates for the semidiscrete Galerkin approximation to a second order linear parabolic initial and boundary value problem with nonsmooth initial data: Numerical  Functional Analysis and Optimizations

[09/36]
Shum H., Gaffney E. A., Smith D. J.: Modelling bacterial behaviour close to a no-slip plane boundary: the influence of bacterial geometry: Proceedings of the Royal Society A  
 
[09/35]
Tran K., Smith N., Loiselle D., Crampin E.:  A metabolite-sensitive, thermodynamically-constrained model of cardiac cross-bridge cycling: Implications for force development during ischemia: Biophysical Journal

[09/34]
Majumdar A., Robbins J. M., Zyskin M.:  Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy: Acta Mathematica Scientia

[09/33]
Ball J. M., Majumdar A.:  Nematic liquid crystals : from Maier-Saupe to a continuum theory: Proceedings of ECLC 2009, Molecular Crystals and Liquid Crystals

[09/32]
Benner P., Faßbender H., Stoll M.:   A Hamiltonian Krylov-Schur-type method based on the symplectic Lanczos process: Linear Algebra & its Applications
 
[09/31]
Bressloff P. C.:  Stochastic neural field theory and the system-size expansion: SIAM Journal of Applied Mathematics

[09/30]
Pani A. K., Yadav S.: An hp-Local Discontinuous Galerkin method for Parabolic Integro-Differential Equations: Journal of Scientific Computing

[09/29]
Rees T., Stoll M., Wathen A.: All-at-once preconditioning in PDE-constrained optimization: Kybernetika

[09/28]
Newby J. M., Bressloff P. C.: Quasi-steady state reduction of molecular motor-based models of directed intermittent search: Bulletin of Mathematical Biology

[09/27]
Derfel G., van Brunt B., Wake G. C.: A Cell Growth Model Revisited: Functional Differential Equations
 
[09/26]
Wake G. C., Begg R. E.: Functional differential equations arising in cell-growth: MATEMATIKA

[09/25]
Stoll M., Wathen A.: Preconditioning for active set and projected gradient methods as semi-smooth Newton methods for PDE-constrained optimization with control constraints: Numerical Linear Algebra with Applications

[09/24]
Aydemir E., Breward C. J. W., Witelski T. P.: The effect of polar lipids on tear film dynamics: Bulletin of Mathematical Biology

[09/23]
Peppin S. S. L., Majumdar A., Wettlaufer J. S.: Morphological instability of a nonequilibrium icecolloid interface: Proceedings of The Royal Society A
 
[09/22]
Majumdar A., Robbins J. M., Zyskin M.: Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy:  Comptes Rendus Mathematique

[09/21]
Fornberg B.: A finite difference method for free boundary problems:  Journal of Computational and Applied Mathematics

[09/20]
Charpin J. P. F., Kobo N. S., Legodi K., Makinde O. D., Ngnotchouye J. M. T., Ockendon H., Owinoh A. Z., Peppin S. S. L., Whiteley J.: Pebble bed: reflector treatment and pressure velocity coupling 

[09/19]
Zygalakis K. C.: On the existence and the applications of modified equations for stochastic differential equations: SIAM Journal of Scientific Computing

[09/18]
Erban R., Chapman S. J., Kevrekidis I. G., Vejchodsky T.: Analysis of a Stochastic Chemical System Close to a Sniper Bifurcation of its Mean Field Model: SIAM Journal of Applied Mathematics

[09/17]
Lee S. S., Gaffney E. A., Monk N. A. M.: The Influence of Gene Expression Time Delays on Gierer-Meinhardt Pattern Formation Systems: Bulletin of Mathematical Biology
 
[09/16]
Baker R. E., Yates C. A., Erban R.: From microscopic to macroscopic descriptions of cell migration on growing domains: Bulletin of Mathematical Biology
 
[09/15]
Rees T., Stoll M.: Block triangular preconditioners for PDE constrained optimization: Numerical Linear Algebra with Applications

[09/14]
Pitt-Francis J., Pathmanathan P., Bernabeu M. O., Bordas R., Cooper J., Fletcher A., Mirams G. R., Murray P., Osborne J., Walter A., Chapman S. J., Garny A., van Leeuwen I. M. M., Maini P. K., Rodriguez B., Whiteley J. P., Byrne H. M., Gavaghan D. J.: Chaste: a test-driven approach to software development for physiological modelling: Computational Physics Communication

[09/13]
Erban R., Chapman S. J: Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions: Physical Biology

[09/12]
Xue C., Othmer H. G., Erban R.: From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems: Proceedings of the 2nd Okinawa Conference on Mathematics and Biology:Multi-Scale Phenomena in Biology Workshop

[09/11]
Pathmanathan P., Gavaghan D. J., Whiteley J. P.: A Comparison of Numerical Methods used for Finite Element Modelling of Soft Tissue Deformation: Journal of Strain Analysis

[09/10]
Majumdar A., Zarnescu A.: Landau-De Gennes theory of nematic liquid crystals: the Oseen-Frank limit and beyond: Archive of Rational Mechanics and Analysis

[09/09]
Majumdar A.: Equilibrium order parameters of nematic liquid crystals in the Landau-De Gennes theory: European Journal of Applied Mathematics

[09/08]
Whiteley J. P.: Model reduction using a posteriori analysis: Mathematical Biosciences
 
[09/07]
Southern J. A., Plank G., Vigmond E. J., Whiteley J. P.: Solving the Coupled System Improves Computational Efficiency of the Bidomain Equations: IEEE Transactions on Biomedical Engineering

[09/06]
Yates C. A., Erban R., Escudero C., Couzin I. D., Buhl J., Kevrekidis I. G., Maini P. K., Sumpter D. J. T.: Inherent noise can facilitate coherence in collective swarm motion: PNAS (Proceedings of the National Academy of Sciences of the United States of America)

[09/05]
Peppin S. S. L., Spannuth M. J., Wettlaufer J. S.: Onsager reciprocity in premelting solids: Journal of Statistical Physics

[09/04]
Madzvamuse A., Gaffney E. A., Maini P. K.: Stability analysis of reaction-diffusion systems with time-dependent coefficients on growing domains: Bulletin of Mathematical Biology
 
[09/03]
Moreo P., Gaffney E. A., García-Aznar J. M., Doblaré M.: On the modelling of biological patterns with mechanochemical models: insights from analysis and computation: Bulletin of Mathematical Biology

[09/02]
Peppin S. S. L.: Diffusion and permeation in binary solutions: Application to protein ultrafiltration: Journal of Non-Equilibrium Thermodynamics

[09/01]
Gaffney E. A., Tiffany J. M., Yokoi N., Bron A. J.: A Mass and Solute Balance Model for Tear Volume and Osmolarity in The Normal And The Dry Eye: Progress in Retinal and Eye Research

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